Microbiome, GPU computing, Network Analysis

Dr. Trevor Cickovski received his Ph.D. from the University of Notre Dame in 2008. He holds Graduate Faculty status and specializes in teaching hardware and Unix coursework, and is IRB-certified and a member of the Bioinformatics Research Group (BioRG) at FIU. He also is a member of the ACM, IEEE, and the National Learning Assistant Alliance (LAA). He has received funding from NIJ (epigenetics), and NSF (machine learning and Covid-19 vaccine discovery). Trevor is lead software developer of PluMA, facilitating natural progress by allowing construction of new ideas as plugins in a choice programming language.

Trevor is passionate about health and explores roles played the microbiome in maintaining homeostasis. Microbiomes have enormous influence given their ubiquity and involvement in host metabolic reactions. He has explored connections with ADHD, A1AD, COPD, smoking, and red tides using multi-omics approaches that integrate DNA, RNA and metabolites through large-scale processing, GPUs, and network analyses. He has several peer-reviewed publications including JMM, LNBI, Bioinformatics, BMC, ICCABS, IWBBIO, and ACM TCBB. He has received funding from NIJ (epigenetics), and NSF (machine learning and Covid-19 vaccine discovery). Trevor is lead software developer of PluMA, facilitating natural progress by allowing construction of new ideas as plugins in a choice programming language. These can be uniformly tested alongside other plugins and committed to a centralized plugin pool. The PluMA plugin pool has grown from 70 to 225+ plugins from 2019 to 2020, and continues to grow.

See more about Dr. Cickovski here: Trevor Cickovski’s Webpage (fiu.edu)